Release History

1.1.6

• Available: https://github.com/WilsonSayresLab/XYalign/releases/tag/v1.1.6
• Fix bug in x axis scaling in variants.plot_read_balance when scaling wasn’t in MB, KB, or BP
• Additional analyses for publication included in “analyses” directory

1.1.5

• Available: https://github.com/WilsonSayresLab/XYalign/releases/tag/v1.1.5
• Fix bug in variants.read_balance_per_window in calculating final window length

1.1.3

• Available: https://github.com/WilsonSayresLab/XYalign/releases/tag/v1.1.2
• More work making utility scripts available in pip and bioconda

1.1.2

• Available: https://github.com/WilsonSayresLab/XYalign/releases/tag/v1.1.2
• Fixed import errors for the utility scripts (plot_cout_stats, plot_window_differences, and explore_thresholds)

1.1.1

• Available: https://github.com/WilsonSayresLab/XYalign/releases/tag/v1.1.1
• Couple of minor documentation and testing updates

1.1.0

• Updates across all of XYalign, but most substantial were:

  • The addition of plot_cout_stats, plot_window_differences, and explore_thresholds
  • XYalign now outputs Adobe Illustrator compatible pdfs for figures
  • Fixing some bugs in VCF parsing
  • Allowing plotting of fixed variants in read balance figures, if desired

• See detailed list of changes here: https://github.com/WilsonSayresLab/XYalign/blob/master/xyalign/CHANGELOG.txt

1.0.0

• Available: https://github.com/WilsonSayresLab/XYalign/releases/tag/v1.0.0
• Major updates across all of XYalign
• See detailed list of changes here: https://github.com/WilsonSayresLab/XYalign/blob/master/xyalign/CHANGELOG.txt

0.1.1

• Available: https://github.com/WilsonSayresLab/XYalign/releases/tag/v0.1.1
• Minor documentation updates

0.1.0

• Available: https://github.com/WilsonSayresLab/XYalign/releases/tag/v0.1
• Initial release
• Released April 5, 2017
• Full support of human-style reference genomes with X and Y chromosomes.
• No support for reference genomes without Y chromosome

0.0.1 Prerelease

• Development version until April 4, 2017